Probiotic-driven microbiome remodeling is associated with coordinated immune and metabolic responses, improving growth and disease resistance in farmed tongue sole (Cynoglossus semilaevis)
Highlights • A probiotic-integrated semi-closed RAS protocol significantly improved growth (+0.08%/day) and survival (+6.9%) in Cynoglossus semilaevis. • Probiotic treatment reshaped the gut microbiota from Vibrio dominance to a Photobacterium-enriched community and altered quorum sensing pathways. • Metagenomics revealed enhanced CAZyme activity and nutrient metabolism potential in the probiotic group. • Multi-tissue transcriptomics demonstrated coordinated immune activation (NF-κB, IgA network) and JAK–STAT-mediated metabolic reprogramming. • Functional validation of ccl19 confirmed enhanced resistance against Vibrio harveyi, supporting an immune–metabolic crosstalk model.