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Explainable AI-SERS Approach for Highly Accurate Discrimination of Escherichia coli Pathotypes and Shigella Species

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  Highlights • XAI–SERS platform enables accurate discrimination of  E. coli  pathotypes and  Shigella. • 1D-CNN model achieved 97.7% accuracy, surpassing traditional classifiers. • SHAP analysis identified key spectral features linked to molecular components. • Provides a precise, interpretable approach for bacterial diagnostics.

One-year multicenter surveillance of Fosfomycin resistance Enterobacterales: the rise of FosA3-producing P. mirabilis

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  Highlights • One-year multicenter survey of fosfomycin-resistant Enterobacterales in Czech Republic hospitals. • FosA3-producing  Proteus mirabilis  predominates. • FosA3-positive  P. mirabilis  ST185 forms a local clonal cluster while  E. coli  clones are heterogeneous. • Transporter defects (GlpT/UhpT) are widespread; most  fosA  strains carry ESBL genes. • Molecular surveillance is crucial to monitor and contain emerging fosfomycin resistance.

A novel self-transmissible mega plasmid from extensively drug-resistant Klebsiella oxytoca carries multiple antimicrobial resistance genes and act as a resistance reservoir

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  Highlights • XDR  Klebsiella oxytoca  found in hospital wastewater with 59 resistance genes • Mega plasmid pKO611.1 carries 28 resistance genes, enabling multidrug resistance • Novel  tet (E) variant and AmpC β-lactamase confer tetracycline & β-lactam resistance • Plasmid pKO611.1 transfers efficiently to  Escherichia coli , spreading resistance • Plasmid recombination shows potential as resistance gene reservoir for dissemination

Aridity gradient overrides degradation in shaping the topsoil microbiome of the Tianshan wild fruit forest

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  Highlights • Aridity index, rather than degradation level, is the paramount driver shaping soil bacterial and fungal communities (explaining ∼43% and ∼30% of the variation, respectively). • The ecosystem harbors an exceptionally stable core microbiome, with 18,510 bacterial ASVs shared across aridity gradients. • Dry sub-humid (alternating wet-dry) conditions promote the most complex and stable microbial co-occurrence networks. • Community assembly of both bacteria and fungi is predominantly governed by stochastic processes (ecological drift). • Microbial functional profiling reveals nitrogen cycling as the dominant process, with distinct adaptations along the aridity gradient.

D-serine metabolism enhances Escherichia coli fitness in the gut and could contribute to Enterobacteriaceae expansion in Crohn's disease patients

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  Highlights • E. coli  isolates from healthy or diseased hosts exhibit distinct metabolic profiles • D-serine utilization is more prevalent in E. coli isolates from Crohn’s patients • The D-serine associated  dsdCXA  cluster enhances E. coli fitness in the gut

Ojcius Leads Research Team

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A new leadership team is now in place to help guide the future of research at the Arthur A. Dugoni School of Dentistry. Dr. David Ojcius, chair of the Department of Biomedical Sciences, was recently named to a new role as assistant dean for research. He will continue to serve as department chair in addition to his new duties. Ojcius brings a wide range of research, scholarship and leadership skills to this role.

Visit of University of Gujrat dean sparks collaboration with Pacific University

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Dean Prof. Dr. Zahid Yousaf of the University of Gujrat (UOG) embarked on a significant visit to the University of the Pacific, California, US, from May 20 to May 25. This visit was planned on the special invitation of Dr Qingwen Dong, Director graduate program and a leading academic from the department of communication. This visit not only facilitated fruitful discussions among academics from both countries but also laid the groundwork for a series of innovative collaborations between the two esteemed institutions. During this visit, Prof. Dr. Zahid Yousaf Engaged in dialogues with key stakeholders including President Christopher Callahan, Vice President Mary Lomax-Ghirarduzzi,  Associate Provost David Ojcius, Dean Lee Skinner, Director of International Scholars and Services, Patrick Wolak, Director Admissions among others. These meetings underscored a shared vision for enhancing academic cooperation and global engagement.