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Predicting competition and substrate preferences for targeted microbiome alteration

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  Highlights • Translation measurements reveal how microbes allocate resources in communities • Functional profiles predict microbial competition and niche allocation • Predictions enable rational design of prebiotic and probiotic interventions • Interventions enable targeted modulation of complex microbiomes  in vitro  and  in vivo

2'3'-cGAMP-induced membrane shearing promotes broad antiphage immunity

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  Highlights • Bacterial CD-NTase synthesizes 2'3'-cGAMP with mammalian cGAS-like enzymatic properties • 2'3'-cGAMP drives stepwise monomer-to-filament assembly of 3TM-SAVED family effectors • Filament assembly reconfigures TM helices and amphipathic hairpins to shear membranes • Vertical membrane shearing defines a distinct mode of membrane disruption

Genomic and structural analysis of major antigenic proteins' variability in the human relapsing fever spirochete Borrelia persica

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  Highlights • Borrelia spirochetes have a unique mechanism to evade host immune system. • Borrelia persica has one chromosome, 12 linear and one circular plasmids. • Telomeric hairpin motifs were detected in the chromosome and linear plasmids. • Plasmid profiles remained stable after one year of continuous in vitro culture. • A Vlp common variable region kept the same external position across structures.

The genome-scale sugar metabolic model from Neurospora crassa reveals lower gene redundancy than that of Aspergillus niger

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  Highlights • Neurospora crassa  has lower sugar metabolic gene redundancy than  Aspergillus niger • The mating type of  N. crassa  affects growth of sugar metabolic deletion strains • We present a strongly improved sugar metabolic model for  N. crassa

The iron-responsive transcription factor HapX drives iron starvation adaptation and virulence in Talaromyces marneffei

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  Highlights • HapX is essential for iron-limited growth in  Talaromyces marneffei . • Deletion of hapX impairs siderophore biosynthesis and disrupts iron-responsive gene regulation. • Loss of HapX reduces conidiation, conidial germination, and stress tolerance (cell wall, membrane, and nitrosative stress). • The Δ hapX  mutant shows increased susceptibility to amphotericin B. • HapX is required for intracellular survival and full virulence in infection models. .

Not just passengers: Phages as agents of genetic exchange in fecal microbiota transplantation

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Fecal microbiota transplantation (FMT) is an effective therapy for recurrent   Clostridioides difficile   infection and is increasingly being explored for other microbiota-associated diseases. However, general research has largely focused on bacterial engraftment, overlooking the contribution of the gut virome. In this perspective, we highlight phage-mediated horizontal gene transfer (HGT) as a potentially influential process occurring following FMT. Donor-derived phages may potentially influence community structure, engraft in resident bacteria, and modulate microbial functions or host physiology. In addition, temperate phages are well-equipped to mobilize bacterial genes, such as metabolic functions, stress-response traits, and antibiotic resistance determinants, raising the possibility that gene flow could well contribute to FMT outcomes. We propose a conceptual model in which phages act as bidirectional mediators of adaptation, not only accompanying bacterial communities b...

Lineage - specific endosymbiosis in Mucorales: restriction of Mycetohabitans to the genus Rhizopus

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  Article highlights • Screening of 578  Mucorales  isolates from clinical and fermented food indicated that endosymbiotic bacteria occur exclusively in  Rhizopus  species. • 16S rDNA sequencing and FISH analyses confirmed  Mycetohabitans  as the predominant bacterial symbiont detected in pathogenic  Rhizopus  strains. • A  Rhizopus homothallicus  isolate was found to harbor  Mycetohabitans  sp. showing 98.37% 16S rRNA similarity to  M. rhizoxinica , suggesting a potential novel species-level lineage. • Ecological and geographic data compilation illustrated that  Mucorales  - bacteria associations span multiple environments and continents.