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Diverse and significant microbe-mediated mineral transformation in deep-sea hydrothermal vent indicated by Methylophaga, Sulfitobacter and Roseovarius

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Highlights • Long-term organic-free enrichment with hydrothermal sulfide/iron-rich sediment successfully constructed diverse sulfur-oxidizing communities. • 36 potential sulfur-oxidizing bacteria (including 10 novel species) were isolated from the mineral-enriched community. • Sulfitobacter  sp. L-8 and  Roseovarius  sp. B-10 achieved 68%–93% thiosulfate consumption and mediated diverse and significant mineral transformation. • This study connects microbial sulfur-oxidizing metabolisms with sulfide weathering, expanding insights into microbial roles in sulfide mineral weathering and utilization. • SOB act as key drivers of sulfide transformation, biogeochemical cycling and energy dynamics in deep-sea hydrothermal vents ecosystems.

Diversity-triggered 2-naphthoic acid exudation recruits keystone microbial taxa to promote soybean drought tolerance

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  Highlights • High rhizosphere microbial diversity improves soybean performance under drought • Diversity-triggered 2-naphthoic acid accumulates under drought stress • Sinorhizobium  CS204 senses 2-naphthoic acid via chemoreceptors and ABC transporters • S .CS204-metabolite synergy boosts nitrogen cycling and plant drought tolerance

High-fat diet causes rapid loss of intestinal group 3 innate lymphoid cells through microbiota-driven inflammation and mitochondrial stress

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  Highlights • Microbiota-driven inflammation and lipid uptake drive intestinal ILC3 lipotoxicity • Inflammatory signaling suppresses fatty acid oxidation in ILC3s but not Th17 cells • ILC3-specific immunometabolic vulnerability is conserved in intestine of mice and human • HFD-mediated intestinal ILC3 depletion is reversible upon dietary normalization

Soil microbial diversity associates with lower prevalence of human bacterial pathogens across global soils

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  Highlights • A global atlas and biogeography of human bacterial pathogens in soils are reported • Dominant human bacterial pathogens are more abundant in wet ecosystems worldwide • Soil biodiversity is negatively associated with the prevalence of human pathogens • Many dominant pathogens are likely to increase their proportion in future climates

Microbial Community Characterization in Semi-Hydroponic Systems of Starbor Kale (Brassica oleracea L.) Grown Under Normal Gravity and Simulated Microgravity

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  Highlights • Bacteria were more abundant in coco coir, particularly in stationary clinostats • Pseudomonadota  and  Actinomycetota  phyla were abundant under simulated gravity • Biomarkers were highest in horizontal clinostats' coco coir under simulated gravity • The GT2 and GT4 classes of glycosyl transferases were abundant in coco-coir samples • The top four antibiotic resistance genes were  adeF, vanY, vanT , and  qacG

Unexplored biosynthetic gene clusters in bacteria isolated from Brazilian stingless bee honey with activity against multidrug-resistant pathogens

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  Highlights • Unexplored source of microorganisms with antibacterial activity; • New species of  Bacillus  sp. with activity against multidrug-resistant  K. pneumoniae ; • Potential chemical and molecular novelty of antibacterial compounds based on genome mining.

Characterization of a novel Mycobacterium tuberculosis serine protease Rv1815 in regulating bacterial metabolism and macrophage intracellular survival

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  Highlights • Bacterial serine proteases play a crucial role in the interaction between bacteria and their hosts, facilitating bacterial invasion and contributing to pathogenicity. Mycobacterium tuberculosis possesses multiple serine proteases; however, the mechanisms of action of these proteases remain incompletely understood. In this study, we characterized the role of a novel serine protease, Rv1815, by purifying it in Escherichia coli and creating a rv1815 deletion mutant in M. tuberculosis to investigate its function. Our research revealed that Rv1815 is located in the cytoplasm of macrophages, exhibits serine protease activity, and can be secreted extracellularly. Moreover, we found that rv1815 is essential for bacterial virulence, survival, metabolism, and antibiotic resistance, as demonstrated by proteomic analysis. Rv1815 also influences bacterial morphology, enhances bacterial growth in vitro, and promotes intracellular survival of M. tuberculosis in macrophages. Further...